this is for my Molecular Modeling in Biology class. I do not know how to answer

Question

this is for my Molecular Modeling in Biology class. I do not know how to answer these questions on vmd. I would like to know the steps that I need to answer any of these questions.

kboard BIO 3356 MOLECULAR MODELING CITY TECH, CUNY Explore the structure of a modeled protein Objectives: The objectives of this assignment are: 1) Use VMD to observe the structure of a newly modeled structure, 2) use your knowledge and critical thinking to find errors in this structure. Background: The determination of protein structures is a process that involves multiple rounds of analysis and validation. Eliminating potential errors is an important objective in the preparation of a model. Your tasks today is to analysis the structure of this model using VMD, and identify the potential errors present Answer the questions below, explain your rationale, and provide appropriate snapshots from VMD to completely answer the questions. You can incorporate your own drawings to illustrate your findings. Q6. Comment on the presence of N-term and C-term in the protein. amino acids? Q7. Does this protein contain one ore more non-common TRK Words 116 ot 139 Pages: 1 of1 W Print Layout View

Explanation / Answer

Each amino acid has amino group and a carboxyl group. amino acid link to one another by peptide bond.this peptide bond is formed by dehydration reaction that join the carboxyl group of one amino acid to the amino group of next amino acid in head to tail to form polypeptide chain.poly peptide chain have two ends one amino group that is N terminus and an unbound carboxyl group that is C terminals..

N terminus also known as amino terminus ,NH2 terminus,N terminal end.

C terminus also known as carboxyl terminus,c terminus tail.

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