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Use BAE56987 to do a PSI -BLAST search. Use the default parameters such as “nr”

ID: 207432 • Letter: U

Question

Use BAE56987 to do a PSI -BLAST search.

Use the default parameters such as “nr” as the database, e-value 10 and the statistical significance threshold to include a sequence for generating the PSSM for the next iteration as 0.005. Change the maximum number of alignments and descriptions, 1000, from the respective pull down menus to retrieve possibly all statistically significant hits.How many iterations did you need to do to connect with XP_005707078.1? What is the % Identity and Coverage for this match?

Explanation / Answer

psiblast is similar tto blast except that it uses the position specific scoring matrices derived diring the research.

it uses position specific scoring matrices to scoore matches between query and data base.

iterations is a process or utterance.a new piece o hardware or software.

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