In the global sequence alignment, what is the impact of the gap penalty? When pe

Question

In the global sequence alignment, what is the impact of the gap penalty? When performing an alignment of two AA sequences. Dayhoff's or another scoring matrix is used. Suppose, a gap penalty it delta. Given a scoring matrix. D(21] [21]. the dynamic programming it to find a path(s) with the largest score, s. Write the core of the dynamic programming forming the for loops that update the score s with respect to the AA score matrix D. Mow is the process of finding the maximum cost path(s) in dynamic programming for the global alignment different from Dijkstra's honest-path algorithm (pick node w with min cost P[w]; update costs of other nodes v by P(v) = min(P[v], P[w] + link_cost(w, v)) (not including the difference between max and min)?

Explanation / Answer

In bioinformatics , the thing which we use for  aligning a small portion of genetic code, we use a scoring system called GAP PENALTY.

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